DreEX0022946 @ danRer10
Exon Skipping
Gene
ENSDARG00000005762 | col14a1a
Description
collagen, type XIV, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9889]
Coordinates
chr16:14820282-14908177:+
Coord C1 exon
chr16:14820282-14820403
Coord A exon
chr16:14833828-14833944
Coord C2 exon
chr16:14908022-14908177
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTTTAATTTTTTTTTGCAGTTC
3' ss Score
10.41
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGCGGGGCAAGCATCACTCACTTGGCTGTAAGGATGCAGGTGTCGGGATCCAGGATTAAGCTGTGGTGTCCGCTTATCTCGCTGGCACTGATTCAGTTTCTTGCCCCTGTTTCAGCTCAAG
Seq A exon
TTCCAGCTCCAAGAAGACTTCGATTTAAAGTTGTGAGTGCAGGAAAGCTTCTTGTCTCATGGAAAGAACCAAAAGGAGAATATAATGGCTACAGATTTATATATAATACAGAACCAG
Seq C2 exon
TAGATCAGTTTGTCTGCACAACTCCTGCCATCGCGGATATTGTCATCCTGGTTGATGGATCTTGGAGTATTGGGCGAATCAATTTCCGTCTGGTCCGCATGTTCCTTGAAAACCTGGTCAACGCCTTTGATGTGGGAATAGACAAAACCAGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005762_MULTIEX1-1/25=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(19.2=33.3)
A:
PF0004116=fn3=PU(47.5=95.0)
C2:
PF0009223=VWA=PU(23.1=75.5)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCATCACTCACTTGGCT
R:
AAGGCGTTGACCAGGTTTTCA
Band lengths:
242-359
Functional annotations
There are 2 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]