GgaEX0024222 @ galGal3
Exon Skipping
Gene
ENSGALG00000016411 | COL14A1
Description
NA
Coordinates
chr2:142379844-142387510:+
Coord C1 exon
chr2:142379844-142379965
Coord A exon
chr2:142385575-142385691
Coord C2 exon
chr2:142387367-142387510
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCCCCACTTGCAGTGT
3' ss Score
11.22
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ACCCACTGATACTGTATACATCAAGTGGGAAAAGATGCTGTGTTGGAATGAGGTACAGAGCTGCTTCCTCTTGGCTTTTTTAGCTGTTGCAGCTTACTCTGTCAGTGATGCCCAGGGCCAAG
Seq A exon
TGTCCCCACCAACAAGGCTAAGGTATAATGTAGTCAATCCTGACAGTGTACAGATCTCTTGGAAAGCCCCCAAAGGGCAATTCAGTGGATATAAGCTGCTTGTCACTCCAAGTTCAG
Seq C2 exon
GTGGAAAAACCAATCAACTAATTCTTCAAAACACTGCAACCAAAGCAATTATTCAGGGTCTCATTCCAGATCAAAACTATGCCCTTCAGATCATTGCATTCAGTGATGACAAGGAGAGTAAGCCAGCCCAAGGCCAGTTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'1-2,'1-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(46.9=95.0)
C2:
PF0004116=fn3=PD(51.9=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCACTGATACTGTATACATCAAGT
R:
TTGGGCTGGCTTACTCTCCTT
Band lengths:
253-370
Functional annotations
There are 2 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]