RnoEX0022849 @ rn6
Exon Skipping
Gene
ENSRNOG00000026415 | Col14a1
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95074236-95089739:+
Coord C1 exon
chr7:95074236-95074323
Coord A exon
chr7:95083992-95084108
Coord C2 exon
chr7:95089596-95089739
Length
117 bp
Sequences
Splice sites
3' ss Seq
TATTTGTTTTTCTTTTTCAGTGG
3' ss Score
10.49
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGACGATTTTGCAATGCAAGATGCGGGCCTGGCTGATTTTGGCTTTTTTGGCAGTTGCTTATTTCTGCACCATCGTTCGGGGGCAAG
Seq A exon
TGGCTCCACCCACAAGGTTAAGATATAATGTAATATCCCATGACAGTATACAGATTTCATGGAAAGCACCAAGAGGGAAATTTGGTGGCTACAAACTGCTCGTGGCTCCTGCTTCAG
Seq C2 exon
GGGGAAAAACCAACCAGATGAATCTCCAGAACGGCGCAACAAAAGCCATTATTCAAGGCCTTCTGCCCGAGCAGAATTACACCGTTCAACTTATTGCCTACTACAAAGACAAGGAAAGCAAGCCAGCTCAGGGCCAGTTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'1-4,'1-2,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(46.9=95.0)
C2:
PF0004116=fn3=PD(51.9=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAATGCAAGATGCGGGC
R:
TTCTGAACTGGCCCTGAGCT
Band lengths:
223-340
Functional annotations
There are 2 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]