RnoEX0022853 @ rn6
Exon Skipping
Gene
ENSRNOG00000026415 | Col14a1
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95083992-95092980:+
Coord C1 exon
chr7:95083992-95084108
Coord A exon
chr7:95089596-95089739
Coord C2 exon
chr7:95092891-95092980
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATCATTCTGCTTTTTTACAGGGG
3' ss Score
9.36
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
TGGCTCCACCCACAAGGTTAAGATATAATGTAATATCCCATGACAGTATACAGATTTCATGGAAAGCACCAAGAGGGAAATTTGGTGGCTACAAACTGCTCGTGGCTCCTGCTTCAG
Seq A exon
GGGGAAAAACCAACCAGATGAATCTCCAGAACGGCGCAACAAAAGCCATTATTCAAGGCCTTCTGCCCGAGCAGAATTACACCGTTCAACTTATTGCCTACTACAAAGACAAGGAAAGCAAGCCAGCTCAGGGCCAGTTCAGAA
Seq C2 exon
TTAAAGATTTAGAGAAAAGAAAGGATCCAACCAAGCCCAGAGTCAAGGCTGTGGACAAAGGAAACGGAAGTAAATCAACTTCACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'2-5,'2-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.102 C2=0.677
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(46.9=95.0)
A:
PF0004116=fn3=PD(51.9=85.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAATATCCCATGACAGTATACAGA
R:
GAAGTTGATTTACTTCCGTTTCCT
Band lengths:
171-315
Functional annotations
There are 2 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]