BtaEX6063495 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83897992-83911228:+
Coord C1 exon
chr14:83897992-83898108
Coord A exon
chr14:83902767-83902910
Coord C2 exon
chr14:83911139-83911228
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCTGTTTTATTTTAGGTG
3' ss Score
12.47
5' ss Seq
GAAGTACGT
5' ss Score
7.46
Exon sequences
Seq C1 exon
TTGCTCCACCCACAAGGTTAAGATACAATGTATTATCTCATGATAGTATCCAGATTTCATGGAAGGCTCCAAGAGGGAAATTTGGTGGATACAAACTTCTTGTGACTCCAGCTTCAG
Seq A exon
GTGGAAAAACCAATCAACTGAATCTCCAGAACACTGCAACGAAAGCAATTATTCAAGGTCTTATGCCAGACCAGAATTACACGGTTCAGATTATTGCATACAATAAAGACAAAGAAAGCAAGCCAGCCCAAGGTCAATTCAGAA
Seq C2 exon
TTAAAGATTTAGAAAAAAGAAAGGAGCCAAAACCCAGAGTCAAAGTTGTGGACAAAGGAGGCGAGAACAAACCATCTGTACCCGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369-'2-7,'2-5,3-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.122 C2=0.581
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(46.9=95.0)
A:
PF0004116=fn3=PD(51.9=85.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACAAGGTTAAGATACAATGTATT
R:
TCCTCGGGTACAGATGGTTTGT
Band lengths:
197-341
Functional annotations
There are 2 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]