BtaEX6063496 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83892853-83902910:+
Coord C1 exon
chr14:83892853-83892940
Coord A exon
chr14:83897992-83898108
Coord C2 exon
chr14:83902767-83902910
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTCCCTTTTCAGTTG
3' ss Score
12.14
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATGAAGATTTTTCACTGCAAGATGCAGTACTGGGTGTTTCCAGCCTTTTTTGTGATTACTTATCTTTGCACCATTGTCCAGGGTCAAG
Seq A exon
TTGCTCCACCCACAAGGTTAAGATACAATGTATTATCTCATGATAGTATCCAGATTTCATGGAAGGCTCCAAGAGGGAAATTTGGTGGATACAAACTTCTTGTGACTCCAGCTTCAG
Seq C2 exon
GTGGAAAAACCAATCAACTGAATCTCCAGAACACTGCAACGAAAGCAATTATTCAAGGTCTTATGCCAGACCAGAATTACACGGTTCAGATTATTGCATACAATAAAGACAAAGAAAGCAAGCCAGCCCAAGGTCAATTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369-'1-5,'1-1,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(46.9=95.0)
C2:
PF0004116=fn3=PD(51.9=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATTTTTCACTGCAAGATGCA
R:
GAATTGACCTTGGGCTGGCTT
Band lengths:
227-344
Functional annotations
There are 2 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]