GgaEX1066014 @ galGal4
Exon Skipping
Gene
ENSGALG00000016411 | col14A1
Description
collagen alpha-1(XIV) chain precursor [Source:RefSeq peptide;Acc:NP_990665]
Coordinates
chr2:136374253-136402851:+
Coord C1 exon
chr2:136374253-136374374
Coord A exon
chr2:136381776-136381919
Coord C2 exon
chr2:136402696-136402851
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTGGTCTTTTCTGTTACAGGTG
3' ss Score
12.42
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
ACCCACTGATACTGTATACATCAAGTGGGAAAAGATGCTGTGTTGGAATGAGGTACAGAGCTGCTTCCTCTTGGCTTTTTTAGCTGTTGCAGCTTACTCTGTCAGTGATGCCCAGGGCCAAG
Seq A exon
GTGGAAAAACCAATCAACTAATTCTTCAAAACACTGCAACCAAAGCAATTATTCAGGGTCTCATTCCAGATCAAAACTATGCCCTTCAGATCATTGCATTCAGTGATGACAAGGAGAGTAAGCCAGCCCAAGGCCAGTTCAGAA
Seq C2 exon
GAAACCTGTTTACCTGTAAAACTCCAGCTATTGCAGATATTGTGATTCTAGTAGATGGCTCCTGGAGTATTGGCCGATTCAATTTCAGACTTGTTCGACTATTCCTGGAAAATCTCGTTTCTGCTTTCAATGTGGGGTCTGAGAAAACAAGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.102 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PD(51.9=85.7)
C2:
PF0009223=VWA=PU(23.1=75.5)
Main Skipping Isoform:
ENSGALT00000026469fB14122
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAAAAGATGCTGTGTTGG
R:
TCTCAGACCCCACATTGAAAGC
Band lengths:
242-386
Functional annotations
There are 2 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]