GgaEX1066014 @ galGal3
Exon Skipping
Gene
ENSGALG00000016411 | COL14A1
Description
NA
Coordinates
chr2:142385575-142390667:+
Coord C1 exon
chr2:142385575-142385691
Coord A exon
chr2:142387367-142387510
Coord C2 exon
chr2:142390581-142390667
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTGGTCTTTTCTGTTACAGGTG
3' ss Score
12.42
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
TGTCCCCACCAACAAGGCTAAGGTATAATGTAGTCAATCCTGACAGTGTACAGATCTCTTGGAAAGCCCCCAAAGGGCAATTCAGTGGATATAAGCTGCTTGTCACTCCAAGTTCAG
Seq A exon
GTGGAAAAACCAATCAACTAATTCTTCAAAACACTGCAACCAAAGCAATTATTCAGGGTCTCATTCCAGATCAAAACTATGCCCTTCAGATCATTGCATTCAGTGATGACAAGGAGAGTAAGCCAGCCCAAGGCCAGTTCAGAA
Seq C2 exon
TTAAAGATATAGAGAGAAGAAAAGAAACAAGTAAATCCAAGGTGAAGGATCCAGAAAAAACAAATGCGAGTAAACCAACTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.102 C2=0.900
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(46.9=95.0)
A:
PF0004116=fn3=PD(51.9=85.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCACCAACAAGGCTAAG
R:
TTCTGGAGTTGGTTTACTCGCA
Band lengths:
202-346
Functional annotations
There are 2 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]