MmuEX6053677 @ mm10
Exon Skipping
Gene
ENSMUSG00000022371 | Col14a1
Description
collagen, type XIV, alpha 1 [Source:MGI Symbol;Acc:MGI:1341272]
Coordinates
chr15:55338406-55344959:+
Coord C1 exon
chr15:55338406-55338522
Coord A exon
chr15:55341681-55341824
Coord C2 exon
chr15:55344870-55344959
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTCGTTCTGTTTTATTACAGGAG
3' ss Score
9.03
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
TGGCTCCACCCACAAGGTTAAGATATAATGTGATTTCCCATGATAGTATACAGATTTCATGGAAAGCACCAAGAGGGAAATTTGGTGGCTACAAACTGCTCGTGGCTCCAGCTTCAG
Seq A exon
GAGGAAAGACCAACCAGATGAATCTCCAGAACACTGCAACAAAAGCGATTATTCAAGGCCTTCTGCCAGAGCAGAACTACACAGTTCAACTCATTGCCTACTATAAAGACAAGGAAAGCAAGCCCGCTCAAGGCCAGTTCAGAA
Seq C2 exon
TTAAAGATTTAGAGAAAAGAAAGGATCCAACAAAGCCCAAAGTCAAGGTTGTGGACAAAGGAAATGGAAGTAAACCAACTTCACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022371-'1-6,'1-4,3-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.102 C2=0.613
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(46.9=95.0)
A:
PF0004116=fn3=PD(51.9=85.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACAAGGTTAAGATATAATGTGAT
R:
TGGTTTACTTCCATTTCCTTTGTCCA
Band lengths:
186-330
Functional annotations
There are 2 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types