BtaEX6063494 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83902767-83935692:+
Coord C1 exon
chr14:83902767-83902910
Coord A exon
chr14:83911139-83911228
Coord C2 exon
chr14:83935537-83935692
Length
90 bp
Sequences
Splice sites
3' ss Seq
TATTTTTACTTTTCTTCCAGTTA
3' ss Score
8.37
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTGGAAAAACCAATCAACTGAATCTCCAGAACACTGCAACGAAAGCAATTATTCAAGGTCTTATGCCAGACCAGAATTACACGGTTCAGATTATTGCATACAATAAAGACAAAGAAAGCAAGCCAGCCCAAGGTCAATTCAGAA
Seq A exon
TTAAAGATTTAGAAAAAAGAAAGGAGCCAAAACCCAGAGTCAAAGTTGTGGACAAAGGAGGCGAGAACAAACCATCTGTACCCGAGGAAG
Seq C2 exon
AAGTGAAATTTTTCTGTCAAACACCGGCTATTGCTGATATTGTAATCCTGGTCGATGGCTCATGGAGTATTGGAAGATTCAACTTCAGACTGGTTCGATCTTTTTTGGAAAACCTGGTTACAGCATTTGACGTGGGCTCCGAGAAGACACGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369-'3-12,'3-7,5-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.581 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.9=85.7)
A:
NO
C2:
PF0009223=VWA=PU(23.1=75.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAAGCAAGCCAGCCCAA
R:
GAGCCCACGTCAAATGCTGTA
Band lengths:
173-263
Functional annotations
There are 1 annotated functions for this event
PMID: 11098058
Alternative splicing of the first F3 domain from chicken collagen XIV affects cell adhesion and heparin binding.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]