MmuEX6053676 @ mm9
Exon Skipping
Gene
ENSMUSG00000022371 | Col14a1
Description
collagen, type XIV, alpha 1 [Source:MGI Symbol;Acc:MGI:1341272]
Coordinates
chr15:55173236-55194092:+
Coord C1 exon
chr15:55173236-55173379
Coord A exon
chr15:55176425-55176514
Coord C2 exon
chr15:55193937-55194092
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCCTTTTCTTCTAGTTA
3' ss Score
10.06
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GAGGAAAGACCAACCAGATGAATCTCCAGAACACTGCAACAAAAGCGATTATTCAAGGCCTTCTGCCAGAGCAGAACTACACAGTTCAACTCATTGCCTACTATAAAGACAAGGAAAGCAAGCCCGCTCAAGGCCAGTTCAGAA
Seq A exon
TTAAAGATTTAGAGAAAAGAAAGGATCCAACAAAGCCCAAAGTCAAGGTTGTGGACAAAGGAAATGGAAGTAAACCAACTTCACCAGAAG
Seq C2 exon
AGGTAAAATTCTTCTGTGAGACTCCAGCCATCGCTGACATCGTCATCCTGGTGGATGGGTCGTGGAGTATTGGGAGGTTCAACTTCAGGCTTGTGCGCAATTTCTTGGAAAACCTGGTCACAGCGTTCAACGTGGGCTCAGAAAAGACAAGAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022371-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.613 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.9=85.7)
A:
NO
C2:
PF0009223=VWA=PU(23.1=75.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAAGGAAAGCAAGCCCG
R:
TGAACGCTGTGACCAGGTTTT
Band lengths:
168-258
Functional annotations
There are 1 annotated functions for this event
PMID: 11098058
Alternative splicing of the first F3 domain from chicken collagen XIV affects cell adhesion and heparin binding.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: