DreEX0023147 @ danRer10
Exon Skipping
Gene
ENSDARG00000020007 | col1a2
Description
collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
Coordinates
chr19:41411082-41412209:+
Coord C1 exon
chr19:41411082-41411135
Coord A exon
chr19:41411260-41411421
Coord C2 exon
chr19:41412102-41412209
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTCACATCAATTAGGGT
3' ss Score
6.61
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGTCTGACTGGCTTCCCTGGTGCTCCTGGTAGAGTTGGACCTCCTGGTCCTGCT
Seq A exon
GGTATTGTTGGACCTGCTGGTCTCACTGGTCCCGCTGGAAAGGATGGCCCACGTGGTCCTCGTGGTGATGTTGGCCCTGCTGGTCCCCCAGGAGAGAATGGAATGATTGGACCTCTTGGTCTGGCTGGTGAGAAGGGACCCCCTGGAGAGGCTGGTGCACCT
Seq C2 exon
GGTGACCGTGGTGAGCCTGGTTCCCCTGGAACTGCTGGACCTGTTGGTGCTCCTGGACCCAATGGACCATCAGGCGCTGTTGGCAGACCTGGAAACCGTGGTGAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020007_MULTIEX1-16/24=15-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.8=100)
A:
PF0139113=Collagen=FE(61.6=100),PF0139113=Collagen=PU(28.3=31.5)
C2:
PF0139113=Collagen=PD(15.9=30.6),PF0139113=Collagen=FE(46.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGACTGGCTTCCCTGG
R:
AGATTCACCACGGTTTCCAGG
Band lengths:
162-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]