MmuEX6002782 @ mm10
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4532744-4534688:+
Coord C1 exon
chr6:4532744-4532797
Coord A exon
chr6:4533742-4533903
Coord C2 exon
chr6:4534581-4534688
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCTTATACATTTGATCACAGGGT
3' ss Score
4.76
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GGTATGACTGGCTTCCCTGGTGCTGCTGGACGGACTGGTCCCCCCGGACCCAGT
Seq A exon
GGTATTGCTGGCCCCCCTGGCCCCCCTGGTGCTGCTGGAAAGGAAGGGATTCGTGGTCCCCGTGGCGACCAAGGTCCAGTTGGCCGAACTGGAGAAACAGGTGCATCTGGACCCCCTGGATTTGTTGGTGAAAAGGGTCCCTCTGGAGAACCTGGTACCGCA
Seq C2 exon
GGAGCCCCTGGTACCGCAGGTCCTCAGGGTCTTCTTGGTGCTCCCGGTATTCTGGGTCTCCCTGGCTCTAGAGGTGAACGTGGTCTGCCAGGTATTGCTGGTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'61-61,'61-59,64-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(2.7=5.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATGACTGGCTTCCCTGGT
R:
CAGAGCACCAGCAATACCTG
Band lengths:
162-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types