GgaEX0014274 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23730982-23735177:+
Coord C1 exon
chr2:23730982-23731035
Coord A exon
chr2:23731891-23732052
Coord C2 exon
chr2:23735070-23735177
Length
162 bp
Sequences
Splice sites
3' ss Seq
ATTCATGCTCGATCCTCTAGGGC
3' ss Score
8.35
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCATGACTGGTTTCCCTGGTGCTGCTGGAAGAGTCGGTCCTCCAGGCCCTGCT
Seq A exon
GGCATCACTGGTCCCCCTGGTCCTCCTGGCCCAGCTGGCAAAGATGGTCCTAGAGGTCTGCGTGGTGATGTTGGTCCAGTTGGCCGTACTGGTGAACAGGGTATTGCTGGCCCACCTGGTTTTGCTGGTGAGAAAGGTCCATCTGGAGAGGCTGGTGCTGCT
Seq C2 exon
GGTGAGCGTGGTGCTCCTGGTAACCCAGGTCCCAGTGGTGCTTTGGGTGCTCCTGGTCCTCATGGCCAAGTTGGTCCTTCTGGAAAGCCTGGAAACCGTGGTGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-31/39=30-35
Average complexity
C3
Mappability confidence:
89%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=FE(20.2=100)
A:
PF0139113=Collagen=PD(1.2=1.9),PF0139113=Collagen=FE(63.1=100),PF0139113=Collagen=PU(41.3=48.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGACTGGTTTCCCTGG
R:
AGGATCACCACGGTTTCCAGG
Band lengths:
162-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]