DreEX0024909 @ danRer10
Exon Skipping
Gene
ENSDARG00000003779 | ctnnd2b
Description
catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
Coordinates
chr2:30590508-30630259:-
Coord C1 exon
chr2:30630116-30630259
Coord A exon
chr2:30627607-30627856
Coord C2 exon
chr2:30590508-30590625
Length
250 bp
Sequences
Splice sites
3' ss Seq
TCCCTACTCTCCTGTTATAGCCC
3' ss Score
9.5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTCCAGGGGTTCGTACAGCAGTCAGCACAGTCACCTGGGCTCCGAGCTCAGACCCCTGCAGTCTCCCGAGCACCATATCGACCCCATTTATGAGGACAGAGTCTATCAGAAAGCCCCCCTGAGGAACTTCAACCAAGCCCAGG
Seq A exon
CCCCTTCCTCTCCTGGTGTTGACTCCATACCCTTACAGCGCACGGGAAGCCAAAACGCCACTGGGACATTCCCTCGCGCTGGTTACGCCACTGGCCCGGGCGCTTCCACCGCCGACTACGCCAACCCGTACCGCACACTGCAGTTCTGCCCCTCTACAGACTCGCCCTACAGCAAATCAGGACCCGCTCTGCCCCCAGAGGCCACGCTAGTCAGGTCGCCCTCTGTGGACAGCATCCAGAAGGACCCCAG
Seq C2 exon
GAATGTGAGCTCGGCCGGAGAAGAGGCCCGTCGCAGGATGCGGGAGTGTGAGGGTCTGACTGATGCGCTGCTCTATGTCATCCAGACAGCCCTGGGCACCAGTGAGATCGACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003779_MULTIEX1-7/11=6-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=0.739 C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGGGGTTCGTACAGCAG
R:
TTGCTGTCGATCTCACTGGTG
Band lengths:
260-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]