RnoEX0025209 @ rn6
Exon Skipping
Gene
ENSRNOG00000010649 | Ctnnd2
Description
catenin delta 2 [Source:RGD Symbol;Acc:620734]
Coordinates
chr2:83731471-83836594:+
Coord C1 exon
chr2:83731471-83731665
Coord A exon
chr2:83744588-83744843
Coord C2 exon
chr2:83836462-83836594
Length
256 bp
Sequences
Splice sites
3' ss Seq
TCCCTACTTTCCTGTCCTAGCCC
3' ss Score
8.61
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTGGGTCCCGAGCCTCGTATAGCAGCCAGCATGGGCACCTGGCCCCTGAGCTGCGGGCCCTGCAGTCCCCAGAGCACCACATAGACCCCATCTATGAAGACCGTGTCTATCAGAAGCCCCCTATGAGGAGTCTCAGCCAGAGCCAGGGGGATCCTCTGCCGCCAGCACACACCGGCACCTTCCGCACGAGCACAG
Seq A exon
CCCCATCCTCCCCTGGTGTCGACTCCGTCCCCTTGCAGCGCACAGGCAGCCAACACGGGCCACAGAATGCCGCAGCAGCCACCTTCCAGAGGGCCAGCTATGCTGCTGGCCCAGCCTCCAACTACGCAGACCCCTACAGACAGCTGCAGTATTGTGCCTCCGCTGACTCTCCGTACAGCAAATCTGGCCCTGCCCTCCCACCCGAAGGCACCTTGGCCAGATCCCCGTCCATTGACAGCATTCAGAAAGACCCCAG
Seq C2 exon
GGAGTTCGGATGGAGAGACCCGGAGCTACCTGAAGTGATACAGATGTTACAGCATCAGTTCCCTTCTGTCCAGTCCAACGCTGCAGCTTACCTGCAACACCTCTGCTTCGGAGACAATAAGATCAAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010649-'14-23,'14-18,16-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.767 C2=0.178
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PU(7.5=3.5)
C2:
PF0051418=Arm=PD(90.0=80.0),PF0051418=Arm=PU(14.6=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCGAGCCTCGTATAGCAG
R:
GTCTCCGAAGCAGAGGTGTTG
Band lengths:
306-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]