GgaEX0019676 @ galGal3
Exon Skipping
Gene
ENSGALG00000013001 | CTNND2
Description
NA
Coordinates
chr2:79823114-79925402:+
Coord C1 exon
chr2:79823114-79823308
Coord A exon
chr2:79844180-79844432
Coord C2 exon
chr2:79925270-79925402
Length
253 bp
Sequences
Splice sites
3' ss Seq
TCCCTACTTTCCTGTCGTAGCCC
3' ss Score
8.6
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTGGGTCTCGGGCATCTTACAGCAGCCAGCACAGCCACCTTGGCTCCGAGTTAAGGGCACTGCAGTCTCCAGAACATCATATAGATCCTATTTACGAAGACAGAGTTTATCAGAAGCCCCCTATGAGGAGTCTCAGCCAGAGTCAGGGGGACCCTCTGCAACCAGCACACACAGGCACATATCGCACTAGTACAG
Seq A exon
CCCCATCTTCCCCTGGTGTCGACTCCGTACCCTTACAGCGCACAGGCAGTCAACACGGCACACAGAACGCAACCGCGACCTTCCAGAGGGCCAGCTATGCTGCAGGCCCAGCCTCCAATTACGCAGACCCCTACCGACAGCTGCAGTATTGTCCTTCTGTTGAATCACCATACAGCAAATCTGGGCCAGCCATCCCACCTGAGGGGACCTTGGCTAGGTCACCTTCCATTGATAGCATTCAGAAAGATCCCAG
Seq C2 exon
AGAGTTTGGATGGCGAGATCCAGAGCTTCCAGAAGTTATACAGATGTTACAGCATCAATTTCCGTCAGTACAGTCCAATGCTGCAGCCTACTTACAGCACCTCTGTTTTGGAGACAATAAAATAAAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001-'2-5,'2-3,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.835 C2=0.178
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PU(7.5=3.5)
C2:
PF0051418=Arm=PD(90.0=80.0),PF0051418=Arm=PU(14.6=13.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCGGGCATCTTACAGCAG
R:
GGTGCTGTAAGTAGGCTGCAG
Band lengths:
292-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]