MmuEX0013083 @ mm10
Exon Skipping
Gene
ENSMUSG00000022240 | Ctnnd2
Description
catenin (cadherin associated protein), delta 2 [Source:MGI Symbol;Acc:MGI:1195966]
Coordinates
chr15:30669412-30775231:+
Coord C1 exon
chr15:30669412-30669606
Coord A exon
chr15:30683215-30683470
Coord C2 exon
chr15:30775099-30775231
Length
256 bp
Sequences
Splice sites
3' ss Seq
TCCCTACTTTCCTGTCCTAGCCC
3' ss Score
8.61
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTGGATCCCGAGCCTCGTATAGCAGCCAGCATGGGCACCTGGCCCCTGAGCTGCGGGCCCTGCAGTCCCCAGAGCACCACATAGACCCCATCTATGAAGACCGTGTCTATCAGAAGCCCCCTATGAGGAGTCTCAGCCAGAGCCAGGGGGATCCTCTGCCGCCAGCACATACCGGCACCTTCCGCACGAGCACAG
Seq A exon
CCCCGTCCTCCCCTGGTGTCGACTCCGTCCCCTTGCAGCGCACAGGCAGCCAACACGGGCCACAGAATGCCGCCGCAGCCACCTTCCAGAGGGCCAGCTATGCTGCCGGCCCAGCCTCCAACTACGCAGACCCCTACCGACAGCTGCAGTATTGTGCCTCCGTTGACTCTCCGTACAGCAAATCTGGCCCTGCCCTCCCACCCGAAGGCACCTTGGCCAGATCCCCATCCATCGACAGCATTCAGAAAGACCCCAG
Seq C2 exon
GGAGTTTGGATGGAGAGACCCGGAGCTGCCTGAAGTGATACAGATGTTACAGCACCAGTTCCCTTCAGTCCAGTCCAATGCTGCAGCTTACCTGCAACACCTCTGTTTTGGAGACAATAAAATTAAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022240-'27-33,'27-25,29-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.742 C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PU(7.5=3.5)
C2:
PF0051418=Arm=PD(90.0=80.0),PF0051418=Arm=PU(14.6=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATCCCGAGCCTCGTATA
R:
TTGCAGGTAAGCTGCAGCATT
Band lengths:
292-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types