DreEX0026395 @ danRer10
Exon Skipping
Gene
ENSDARG00000068208 | def8
Description
differentially expressed in FDCP 8 homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-041114-96]
Coordinates
chr18:31432601-31465679:+
Coord C1 exon
chr18:31432601-31432728
Coord A exon
chr18:31452953-31453066
Coord C2 exon
chr18:31465539-31465679
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTGATGTGTTTAGGTG
3' ss Score
8.57
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GTGGTATTCCTAATGAGGCACGTCAGTGTGATTATACCGGTCAGTATTACTGCAGCAGTTGCCACTGGAATGACACTGCCATCGTTCCAGCAAGAGTCATACACAACTGGGAGTTTGAACCCCGTAAG
Seq A exon
GTGTGTCGTTCCTCAATGCGTTATCTTGCTTTAATGATGCCCAGGCCTGTGCTCAGACTGAAGGAGATTAATCCTCTGCTTTTCAACTTTGTGGAGGACCTGGTTGAGATCAGA
Seq C2 exon
CTTCAAGACCGGCAGCACTTTGTGGAGAATGATGACATGTATAGCCTACAGGATCTGATTGACACTTCCAATGGACGTCTCAGCTGTTCCCTTACTGAAATTCACACAACTTTTGCCAAACATATTAAACTGGACTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068208_MULTIEX1-7/10=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF144451=Prok-RING_2=PD(62.2=66.7),PF139011=DUF4206=WD(100=81.0)
A:
PF139011=DUF4206=FE(47.4=100),PF139011=DUF4206=PU(1.9=5.3)
C2:
PF139011=DUF4206=PD(3.8=6.4),PF139011=DUF4206=FE(43.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTAATGAGGCACGTCAGT
R:
TGTTTGGCAAAAGTTGTGTGA
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]