RnoEX0027061 @ rn6
Exon Skipping
Gene
ENSRNOG00000000264 | Def8
Description
differentially expressed in FDCP 8 homolog [Source:RGD Symbol;Acc:1309008]
Coordinates
chr19:56252166-56254462:+
Coord C1 exon
chr19:56252166-56252293
Coord A exon
chr19:56252424-56252537
Coord C2 exon
chr19:56254382-56254462
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCAACTGCCTGCCCTGTAGGTG
3' ss Score
8.11
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GAGGTGTGCCTAGTGAAGCCCGGCAGTGCGACTACACCGGCCAGTACTACTGCAGCCACTGCCACTGGAACGACTTGGCTGTTATCCCTGCCAGAGTAGTACACAACTGGGACTTTGAGCCACGCAAG
Seq A exon
GTGTCCCGTTGCAGCATGCGTTACTTGGCACTGATGGTGTCTCGGCCAGTGCTCCGGCTCCGGGAGATTAACCCCTTGCTGTTTAACTATGTGGAAGAACTGGTGGAGATCCGG
Seq C2 exon
AAGCTGCGCCAGGACATCCTGCTCATGAAGCCATACTTTATCACCTGCAAGGAGGCCATGGAGGCACGACTGCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000264_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=PU(17.1=81.4)
A:
PF139011=DUF4206=FE(18.0=100)
C2:
PF139011=DUF4206=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTGCCTAGTGAAGCCC
R:
GCAGTCGTGCCTCCATGG
Band lengths:
200-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]