HsaEX0019077 @ hg19
Exon Skipping
Gene
ENSG00000140995 | DEF8
Description
differentially expressed in FDCP 8 homolog (mouse) [Source:HGNC Symbol;Acc:25969]
Coordinates
chr16:90028145-90029851:+
Coord C1 exon
chr16:90028145-90028272
Coord A exon
chr16:90028420-90028533
Coord C2 exon
chr16:90029771-90029851
Length
114 bp
Sequences
Splice sites
3' ss Seq
CACCCGGCCGTGCCTGGCAGGTT
3' ss Score
7.87
5' ss Seq
CGCGTGAGG
5' ss Score
4.08
Exon sequences
Seq C1 exon
GGGGTGTGCCCAGTGAGGCCAGGCAGTGCGACTACACCGGCCAGTACTACTGCAGCCACTGCCACTGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAACTGGGACTTTGAGCCTCGAAAG
Seq A exon
GTTTCTCGCTGCAGCATGCGCTACCTGGCGCTGATGGTGTCTCGGCCCGTACTCAGGCTCCGGGAGATCAACCCTCTGCTGTTCAGCTACGTGGAGGAGCTGGTGGAGATTCGC
Seq C2 exon
AAGCTGCGCCAGGACATCCTGCTCATGAAGCCGTACTTCATCACCTGCAGGGAGGCCATGGAGGCTCGTCTGCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140995_MULTIEX2-5/5=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=PU(17.1=81.4)
A:
PF139011=DUF4206=FE(18.0=100)
C2:
PF139011=DUF4206=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCCAGTGAGGCCAG
R:
CAGCAGCAGACGAGCCTC
Band lengths:
202-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)