GgaEX1019237 @ galGal4
Exon Skipping
Gene
ENSGALG00000025712 | DEF8
Description
differentially expressed in FDCP 8 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:25969]
Coordinates
chr11:18294635-18295480:+
Coord C1 exon
chr11:18294635-18294762
Coord A exon
chr11:18295000-18295113
Coord C2 exon
chr11:18295400-18295480
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGACAGCGCTGTATGTGCAGGTG
3' ss Score
4.99
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
GAGGGGTGCCCAGTGAGGCCCGACAGTGTGACTACACCGGCCTCTACTACTGCAGCAGCTGTCACTGGAATGACCTGGCTGTCGTCCCCGCCCGCGCCATCCACAACTGGGACTTCGAGCCCCGCAAG
Seq A exon
GTGTCCCGCTGCAGCATGCGGTACCTGGCGCTGATGGTGTCGCGGCCCGTGCTGAAGCTGCGGGAGATCAACCCTCTGCTCTTCAACTACGTGGAGGAGCTGGTGGAGATCCGG
Seq C2 exon
AAGCTGCGCCAGGACATCCTGCTCATGAAGCCATACTTTATCACCTGCAAAGAGGCAATGGAAGCACGGCTGCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025712_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF139011=DUF4206=PU(47.3=81.4)
A:
PF139011=DUF4206=FE(50.0=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGGCCCGACAGTGTG
R:
CCGTGCTTCCATTGCCTCTTT
Band lengths:
186-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]