DreEX0026407 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23382288-23411648:+
Coord C1 exon
chr22:23382288-23382389
Coord A exon
chr22:23404125-23404250
Coord C2 exon
chr22:23411547-23411648
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTAACTGTGTGTGTGTCAGGTG
3' ss Score
10.38
5' ss Seq
CCCGTAAGA
5' ss Score
5.66
Exon sequences
Seq C1 exon
AGAGTAAAGAGCAGATCCCTGGAGGATGTGGTCATTCTGAACGTGGACACAAACACCCTGGAAAGCCCCACAGATGACCTGCACAACCTGCCTAGTGATGTG
Seq A exon
GTGTCGAGTCTGAAGAGTAAGCTGAAGAAGCAGTCCACGGCGACCGGCGCTGGTGTGGCCCGGGCCTTTCTGCACGCTCAGGCCGCGCTCTTCGGATCCTACCGGGACGCCCTCCGATATAAACCC
Seq C2 exon
GGAGAGCCAATCACCTTCTGCGAGAAGAGCTTCGTGGCACACCGTTCCAGCGCCATGAGAGGCTTCCTTGAGATGGCAGTGAACCTGCAACTCTTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(9.4=50.0)
A:
PF0345514=dDENN=PU(40.3=64.3)
C2:
PF0345514=dDENN=FE(50.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTAAAGAGCAGATCCCTGGA
R:
TGCTTGAAGAGTTGCAGGTTCA
Band lengths:
203-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]