MmuEX6027862 @ mm10
Exon Skipping
Gene
ENSMUSG00000056268 | Dennd1b
Description
DENN/MADD domain containing 1B [Source:MGI Symbol;Acc:MGI:2447812]
Coordinates
chr1:139090454-139110485:+
Coord C1 exon
chr1:139090454-139090555
Coord A exon
chr1:139101968-139102093
Coord C2 exon
chr1:139110384-139110485
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTCTCTGCCATGCAGGTC
3' ss Score
9.97
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
Exon sequences
Seq C1 exon
AGAGTGAAAAATAAATCATTGGAAGATGTGGTTGTGTTAAATGTTGACACAAACACGTTAGAATCACCATTTAATGACTTGAGCAGCCTGCCCAGTGATGTG
Seq A exon
GTCTCGGCCTTGAAAAATAAGCTGAAGAAGCAGTCCACAGCTACGGGAGATGGAGTGGCTCGGGCCTTTCTGAGGGCTCAGGCGGCTTTGTTTGGCTCCTACCGAGATGCTCTGAGATACAAGCCT
Seq C2 exon
GGCGAGCCCATCACCTTCTGTGAGGAGAGCTTTGTAAAGCACCGCTCAAGCGTGATGAAACAGTTCCTGGAGACTGCAGTTAACCTTCAGCTCTTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056268-'23-37,'23-30,34-37=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(9.4=50.0)
A:
PF0345514=dDENN=PU(40.3=64.3)
C2:
PF0345514=dDENN=FE(49.3=100)
Main Skipping Isoform:
ENSMUST00000168527fB8666
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCATTGGAAGATGTGGTTGTGT
R:
AAAGAGCTGAAGGTTAACTGCA
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types