RnoEX0027112 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56161619-56183125:+
Coord C1 exon
chr13:56161619-56161720
Coord A exon
chr13:56173047-56173172
Coord C2 exon
chr13:56183024-56183125
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTCTCTGCCATGCAGGTC
3' ss Score
9.97
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
Exon sequences
Seq C1 exon
AGAGTGAAAAATAAATCATTGGAAGATGTGGTTATGTTAAATGTTGACACAAACACATTAGAATCACCATTTAATGACGTGAACAGCCTGCCCAGTGATGTG
Seq A exon
GTCTCGGCCTTGAAAAATAAGCTGAAGAAGCAGTCCACAGCTACGGGAGATGGAGTGGCTCGGGCCTTTCTGAGGGCGCAGGCAGCTTTGTTTGGCTCCTACCGAGATGCTCTGAGATACAAGCCT
Seq C2 exon
GGCGAGCCCATCACCTTCTGTGAGGAGAGCTTTGTAAAGCACCGCTCAAGTGTGATGAAACAATTCCTGGAGACTGCAGTTAACCTTCAGCTGTTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063-'28-31,'28-30,32-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(23.0=50.0)
A:
PF0345514=dDENN=PU(40.3=64.3)
C2:
PF0345514=dDENN=FE(49.3=100)
Main Skipping Isoform:
ENSRNOT00000043907fB4035
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCATTGGAAGATGTGGTTATGT
R:
AAACAGCTGAAGGTTAACTGCA
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]