GgaEX1019263 @ galGal3
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2433061-2451175:+
Coord C1 exon
chr8:2433061-2433162
Coord A exon
chr8:2442000-2442125
Coord C2 exon
chr8:2451074-2451175
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTTCCACTCTGTCATGCAGGTC
3' ss Score
8.45
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
Exon sequences
Seq C1 exon
AGAGTGAAAAATAGATCACTGGAAGATGTGGTTTTGCTAAATGTTGACACAAACCATCTAGAAAACCCTTTTAATGACCTGAACAACCTACCCGGTGAAGTG
Seq A exon
GTCTCGGCCCTGAAAAATAAACTGAAAAAGCAGTCTACAGCTACGGGTGACGGAGTAGCCAAGGCGTTTCTTCGGGCGCAGGCATCACTGTTTGGATCCTACAGAGATGCACTGAGATACAAGCCA
Seq C2 exon
GGAGAACCTATAACTTTCTGTGAGAATAGTTTTGTGAAGCATCGTTCCAGTACTACAAAACAGTTCCTGGAAACTGCTGTTAATCTTCAACTGTTTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(9.4=50.0)
A:
PF0345514=dDENN=PU(40.3=64.3)
C2:
PF0345514=dDENN=FE(49.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGATCACTGGAAGATGTGGT
R:
TGTTTAAACAGTTGAAGATTAACAGC
Band lengths:
194-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]