DreEX0027417 @ danRer10
Exon Skipping
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34442712-34445897:-
Coord C1 exon
chr11:34445742-34445897
Coord A exon
chr11:34445228-34445426
Coord C2 exon
chr11:34442712-34442965
Length
199 bp
Sequences
Splice sites
3' ss Seq
ATTATATGCTTGTGGTCTAGTAC
3' ss Score
4.22
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATGGTGGTGGCTGGATTTTCTGGTTATACAAACCTTGAGCGAGCACACGAAGTGGCAAATGAAGTGCGGAGAGTAGGCAAACAGCTGAAAGAGTGCCAGGAAATGGCGCAGCTTTACAATAACCGTGAACGACTCTTTGGAAAACCAGTTACTAAT
Seq A exon
TACACAGAGTTACAGAAGCTAAACCGAGACTTTCAGCCTTTTCATGACCTGTGGAAAACAACATCAGATTGGCTGCGATGGCATGAAAGCTGGCTCAATGACCCGCTGGCAGCCATCAACCCTGAACAGCTGGAGCGTAATGTCACTGATGCTTACAAGACTATGCACCAGTGTGTCAAACAGTTTAAAGATCTTCCTG
Seq C2 exon
CCTGTCAAGAAGTAGCATCTGAAATCCGGACTAAAATTGAAGCATTCCGTCCGTTTATCCCTCTGATCCGAAGCCTGAGGAATCCTGGCATGCGGAATCGCCACTGGGAACTTCTCTCTGAACGTATCAACATAAATATGAGGTCCAGAGCAAATCTGACTTTTTCTCTTTGTCTGGAGTTGGGCCTGCAAGATCATGTGGAGGAAATCACACGCGTGGCTCAGGAAGCTGGAAAAGAATATTCTATCGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-'19-20,'19-19,22-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(15.6=95.5)
C2:
PF083938=DHC_N2=FE(20.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGCTGGATTTTCTGGT
R:
ATGCCAGGATTCCTCAGGCTT
Band lengths:
244-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]