GgaEX6009958 @ galGal3
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2879951-2882843:+
Coord C1 exon
chr12:2879951-2880106
Coord A exon
chr12:2881022-2881220
Coord C2 exon
chr12:2882590-2882843
Length
199 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTTTCTTTCCAAAGTAC
3' ss Score
7.53
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTGACTGTAGGTGAATTTTCTGTCCAGGTGGACATCAGACAAGCTCATACTTTGGCTAATGAAGCAAGGCTGGTTGGGAAACAGCTGAAGGAGCTTCAGAATTTGGCCATTCTGTACAACAACCGGGAAAAAATCTTTGGGATGAAAATTACTAAT
Seq A exon
TACAAGAAGCTATCCAGGATGGTGAAGGACTTCCAGCCATATTGTGATCTCTGGACTACGGTGTCAGACTGGCTGAACTGGTGTAAGAGCTGGATGGATGGTCCTCTCATTGAAATTGATGCTGAGCAGCTAGAAAAGAATGTCAATGACTCTTTTAAGACAATGCAGAAGTGTGTGAGGCAGTTCAAAAACTCACCAG
Seq C2 exon
CATGCCAGGGTGTGGCAATGGAGTTCCGAGACAAGATTGAAGAGTTCAGACTATATGTCCCCTTAATCCAAGGGCTGAACAATCCCGGGATGGGAAGGAGGCACTGGGAGATGCTGTCAGAAGATATTAACATGGACATCAAGCTAGAATCCGATCTGACCCTTCGTCGCTGTTTGGATATGAACCTGCAGGACCATATTGAGAGTATTACCAAAGTAGCTGAGATAGCTGGCAAGGAATACGCTATTGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(15.8=97.0)
C2:
PF083938=DHC_N2=FE(20.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTGGGAAACAGCTGAAGG
R:
CGACGAAGGGTCAGATCGGAT
Band lengths:
255-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]