MmuEX6040520 @ mm9
Exon Skipping
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32113930-32115093:-
Coord C1 exon
chr14:32114938-32115093
Coord A exon
chr14:32114364-32114562
Coord C2 exon
chr14:32113930-32114183
Length
199 bp
Sequences
Splice sites
3' ss Seq
CTCACCCTCTGCCCCTGTAGTAT
3' ss Score
8.05
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
CTGGTGGTGGCTGGCTTCTCCATCCATGTGGAGATTGCACGAGCACACGAGATTGCCAACGAGGTGCGGCGGGTCAAGAAGCAGCTGAAGGACTGCCAGCAGCTGGCGATGCTGTACAACAACCGCGAGCGCATCTTTGGCTTGCCTATCACCAAT
Seq A exon
TATGACAAGCTCTCAAGAATGGTGAAGGAATTCCAACCATACCTGGACCTCTGGACCACAGCCTCAGACTGGCTGCGGTGGTCTGAGAGCTGGATGAATGATCCTCTGTCAGCCATTGATGCTGAGCAGCTGGAGAAGAATGTCATTGAGTCGTTCAAGACCATGCACAAATGTGTGAAGCAGTTCAAGGACATCCCAG
Seq C2 exon
CCTGCCAGGAGGTGGCTTTGGATATCCGAACACGCATAGAGGAGTTCAAGCCGTACATCCCGCTGATCCAAGGCCTGCGCAACCCTGGTATGCGGAACCGGCACTGGGAGGTACTGTCCAATGAGATCAACATCAATGTCAGGCCCAAGGCCAACTTGACCTTTGCCCGCTGCCTGGAGATGAACCTTCAAGACCATATTGAGAGCATCAGCAAGGTGGCTGAAGTGGCTGGCAAGGAGTATGCTATTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(15.8=97.0)
C2:
PF083938=DHC_N2=FE(20.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGATGCTGTACAACAACC
R:
GAAGGTTCATCTCCAGGCAGC
Band lengths:
242-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: