RnoEX6054765 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7383584-7384666:-
Coord C1 exon
chr16:7384511-7384666
Coord A exon
chr16:7383998-7384196
Coord C2 exon
chr16:7383584-7383837
Length
199 bp
Sequences
Splice sites
3' ss Seq
CTCGCCCTCTGCCCCTGTAGTAT
3' ss Score
8.01
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
CTGGTGGTGGCTGGCTTCTCCACCCATGTGGAGATTGCACGAGCACACGAGATTGCCAACGAGGTGCGGCGGGTCAAGAAGCAGCTAAAGGACTGCCAGCAGCTGGCGATGCTGTACAACAACCGCGAGCGCATCTTTGGCTTGCCTATCACCAAC
Seq A exon
TATGACAAGCTCTCAAGAATGGTGAAGGAATTCCAACCCTACCTGGACCTCTGGACCACAGCCTCAGACTGGCTGCGCTGGTCTGAGAGCTGGATGAACGATCCTCTGTCAGCCATTGACGCTGAGCAGCTGGAGAAGAACGTCATCGAGTCGTTCAAGACCATGCACAAGTGCGTGAAGCAGTTCAAGGACATCCCAG
Seq C2 exon
CCTGCCAGGATGTGGCTTTGGATATCCGAGCACGCATAGACGAGTTCAAGCCGTACATACCGCTGATCCAAGGCCTGCGCAACCCTGGCATGCGGAACCGCCACTGGGAGGTGCTGTCCAATGAGATCAACATCAACGTCAGGCCCAAGGCCAACCTGACCTTTGCCCGCTGCCTTGAGATGAACCTTCAGGACTATATTGAGAGTATCAGCAAGGTGGCTGAGGTGGCTGGCAAGGAGTATGCTATTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'29-25,'29-24,31-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(15.8=97.0)
C2:
PF083938=DHC_N2=FE(20.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCGATGCTGTACAACAA
R:
AAGGTTCATCTCAAGGCAGCG
Band lengths:
243-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]