DreEX0027486 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25184924-25188876:-
Coord C1 exon
chr9:25188679-25188876
Coord A exon
chr9:25185409-25185564
Coord C2 exon
chr9:25184924-25185092
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGCCTCCAAATCTCCCACAGGAC
3' ss Score
9.96
5' ss Seq
ATGGTATAC
5' ss Score
2.73
Exon sequences
Seq C1 exon
GGTCCAGGCAGATGGGAATTGTGGACCGAGGAGCTGAAGGCTTTCCCCCCCATTCCCAAAGATGTGCAGTTCAACGAAATAATTGTGCCTACGGAGAACACTGTACGCTACAATGCTCTCATGAAGCTGCTCATCACTCATCAGAAGCCCACCGTCTTTGTTGGCCCCACGGGGACTGGCAAGAGCGTCTATATTCTG
Seq A exon
GACTTTTTGCTGAATCGTCTGGAGAAGGATGTGTACAGTCCTCTGTTGATCAACTTCTCAGCACAAACAACAGCAGCACAGACCCAAAACATTATTATGTCAAAACTTGATAAAAGGAGGAAAGGAGTGTTTGGCCCTCCCCTGGGAAAGAAAATG
Seq C2 exon
GTGGTTTTTGTGGATGATGTGAATATGCCAGCAAGAGAGACGTATGGAGCCCAGCCTCCAGTGGAGCTTCTGCGGCAGTGGCTTGACCACTGGAACTGGTATGACATGAAGGACTGCTCCATGATCAACTTAGTGGACATCCAGATCATGTGTGCTATGGGTCCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(17.9=74.2)
A:
PF127752=AAA_7=FE(18.6=100)
C2:
PF127752=AAA_7=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAGGCAGATGGGAATTG
R:
CCATACGTCTCTCTTGCTGGC
Band lengths:
245-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]