MmuEX0015020 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46278424-46281622:+
Coord C1 exon
chr1:46278424-46278621
Coord A exon
chr1:46279917-46280072
Coord C2 exon
chr1:46281454-46281622
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCTTATTTTCTGTTGTGTAGAAT
3' ss Score
7.72
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGCTTAGGAAGATGGGATAAATGGATAAAGAAATTGGCAGATACTCCTCCAATTCCCAAAGATGTACAGTTTATTGAGATCATTGTGCCAACTCTCGACACAATCCGTTACTCTGCTCTAATGCATTTACTGACCACTCATCAAAAGCCTTCAATATTTGTAGGACCAACAGGAACTGGAAAGAGTGTTTATATCATT
Seq A exon
AATTTTCTTTTAAATCAACTCAATAAGGACATCTACAAACCTCTTATAGTAAACTTCTCAGCCCAAACTACAGCAGCCCAAACTCAGAATATCATCATGTCGAAACTGGACAAAAGAAGAAAAGGAGTTTTTGGCCCTCCTTTAGGCAAGAGAATG
Seq C2 exon
ATAGTCTTTGTAGATGATGTGAATATGCCTGCCCGAGAGGTCTATGGGGCTCAGCCTCCCATTGAATTACTTAGACAGTGGTTAGATCATTGGAATTGGTACGACCTCAAAGATTGCTCTGTGATTAAACTAGTGGACATCCAGATCATGTGCGCTATGGGTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'40-37,'40-36,41-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(17.9=74.2)
A:
PF127752=AAA_7=FE(18.6=100)
C2:
PF127752=AAA_7=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACACAATCCGTTACTCTGCT
R:
CGCACATGATCTGGATGTCCA
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: