HsaEX0020208 @ hg38
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:195875675-195881992:-
Coord C1 exon
chr2:195881795-195881992
Coord A exon
chr2:195876544-195876699
Coord C2 exon
chr2:195875675-195875843
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTATTATTTTGTTATATAGAAT
3' ss Score
6.41
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
GGAATAGGAAAATGGGAACCATGGATAAAGAAATTGAAAGAAGCTCCTCCAATTCCTAAAGATGTAATGTTTAATGAAATCATTGTGCCAACTCTGGACACAATTCGATACTCTGCATTAATGGAATTGCTGACCACCCATCAAAAGCCTTCAATATTTGTAGGACCAACAGGAACTGGGAAAAGTGTTTACATTACG
Seq A exon
AATTTTCTTTTAAATCAACTAAATAAGGAAATCTACAAACCTCTGCTAATTAACTTCTCAGCACAAACTACAGCAGCTCAAACTCAGAATATTGTCATGTCAAAATTGGACAAGAGAAGAAAGGGAGTTTTTGGTCCTCCTTTGGGCAAGAGAATG
Seq C2 exon
GTTGTCTTTGTAGATGATGTCAATATGCCTGCTCGGGAGGTATATGGGGCTCAACCTCCCATTGAGTTACTTAGACAGTGGTTAGACCACTGGAACTGGTATGATCTAAAAGATTGTTCCATGATTAAACTAGTGGACATTCAGATCATGTGTGCTATGGGACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997_MULTIEX4-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(17.9=74.2)
A:
PF127752=AAA_7=FE(18.6=100)
C2:
PF127752=AAA_7=FE(20.4=100)
Main Skipping Isoform:
ENST00000312428fB14000
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTGCTGACCACCCATCA
R:
TGGAGGTCCCATAGCACACAT
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development