GgaEX0011160 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9223861-9228104:-
Coord C1 exon
chr7:9227907-9228104
Coord A exon
chr7:9225109-9225264
Coord C2 exon
chr7:9223861-9224029
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTCAATTCTTCCAGAAT
3' ss Score
8.69
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
GGAGAAGGAATTTGGGAACCTTGGGTGGAAACGCTCAAATCAGCTCCTCCTATACCTCAGGATGTGACGTTTAATGAAATAATAGTGCCAACTCTGGATACAGTTCGATATATGTCTTTGATGGAGTTGTTGACAGTGCATCAAAAGCCTTCTATGTTTGTGGGGCCAACAGGAACTGGAAAAAGTACCTATATCACT
Seq A exon
AATTTCCTTTTAAATAATTTGAATAAAGAAGTCTACAAGCCACTGCTCATTAACTTTTCAGCACAAACTACGGCAGCTCAGACTCAGAATATTATAATGTCTAAGCTGGATAAAAGGAGAAAAGGAATTTTTGGGCCTCCTTTGGGGAAAAGAATG
Seq C2 exon
GTTGTATTTGTAGATGATGTTAACATGCCAGCCCGAGAGGTCTATGGTGCTCAACCTCCTGTTGAGTTACTACGACAGTGGTTAGATCACTGGAATTGGTATGACCTTAAAGACTGCTCAATGATAAAACTTGTAGATATTCAGATTGTCTGTGCAATGGGACCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'39-46,'39-45,40-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(17.9=74.2)
A:
PF127752=AAA_7=FE(18.6=100)
C2:
PF127752=AAA_7=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTGTTGACAGTGCATCA
R:
GTGGTCCCATTGCACAGACAA
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]