DreEX0027495 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21411385-21422783:+
Coord C1 exon
chr1:21411385-21411552
Coord A exon
chr1:21412553-21412788
Coord C2 exon
chr1:21422522-21422783
Length
236 bp
Sequences
Splice sites
3' ss Seq
GTTGACCTCTTGATGTGTAGGTG
3' ss Score
5.4
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCACGAGACCGCATCAAAAATGGTCTAACTAAATTGCTGGAGACAAATGAGCTGGTTGATAAGATGAAGCAAGACCTCTCGGCTCTGGAGCCAGTGCTTGCGCAGAAATCAATCGATGTCAGTGCTCTTATGGAGAAACTTGCCGTGGACCAAGAAAACGCGGATCAG
Seq A exon
GTGCGTAGGGTTGTGAAAGAGGATGAAGCTTTGGCTAAGGTAAAGGCAGAAGAGACTCAAGCCATTGCAGATGATGCACAGCGTGACTTGGATGAGGCTCTGCCTGCACTCGACAGCGCCAATAAGGCCCTCAATGCCCTTGACAAAGCTGACATTTCAGAAATGCGCGTCTTTACCAAACCACCAGACCTCGTGATGACTGTGATGGAAGCTGTGTGCATCCTGCTCAGCAACAA
Seq C2 exon
GACAGACTGGGCCAGTGCAAAGCAGCTCCTGGGAGATGGCAACTTCTTGAAAAAACTCATGGACTATGACAAAGACAATATCAAACCTCAGATCCTCCAGAAGCTACACAAATACATTAGCAATCCAGACTTTGTGCCTGAAAAGGTGGAAAAAGTGTCCAAGGCATGCAAGTCCATGTGCATGTGGGTGAGAGCCATGGACCTGTACTCAAGAGTTCTGAAAGAGGTCGGACCTAAACGAGAAAAGCTGGCTGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'54-56,'54-55,55-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(15.8=94.6)
A:
PF127772=MT=FE(23.3=100)
C2:
PF127772=MT=FE(26.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGCAAGACCTCTCGGC
R:
ACCCACATGCACATGGACTTG
Band lengths:
295-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]