MmuEX6004947 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73082888-73086227:-
Coord C1 exon
chr6:73086060-73086227
Coord A exon
chr6:73084651-73084886
Coord C2 exon
chr6:73082888-73083149
Length
236 bp
Sequences
Splice sites
3' ss Seq
AACCTTGATTCTGTGGTTAGGTC
3' ss Score
6.18
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCACGAGATCGTGTAAAGAATGGTCTCACCAAGCTACTAGAAACAAATGTACTAGTAGATAAAATGAAATTAGACCTTTCGGCTTTAGAACCTGTGCTACTACAGAAATCACAAGATGTTGAAGCCCTGATGGAAAAACTAGTGGTGGACCAAGAAAGTGCTGATCAG
Seq A exon
GTCCGTAATGTTGTGCAAGAAGATGAAGCAATAGCAAAGGTGAAAGCTGAAGAGACTCAAGCGATCGCTGATGATGCCCAGAGAGACCTGGAGGAGGCACTCCCCGCCCTCGAAGCTGCCAATAAAGCACTGGATTCCTTAGACAAAGCAGATATCTCTGAAATCAGAGTCTTCACAAAGCCCCCCGACTTGGTCATGACTGTGATGGAAGCCATCTCCATCCTCTTAAATGCCAA
Seq C2 exon
GCCCGACTGGCCAACAGCAAAGCAACTTCTTGGTGACTCTAACTTCCTAAGAAGGCTTTTAGAATACGATAAGGAGAACATAAAGCCGCAGATCCTGTTGAAGCTTCAGAAGTACATCAACAATCCTGACTTCGTGCCTGAGAAGGTGGAGAAGGTGTCCAAGGCCTGCAAATCCATGTGCATGTGGGTGAGAGCCATGGATCTGTACTCTCGGGTGGTCAAGGAAGTTGAACCAAAGAGACAGAAGCTCCGTGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'58-57,'58-56,60-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(15.8=94.6)
A:
PF127772=MT=FE(23.3=100)
C2:
PF127772=MT=FE(26.0=100)
Main Skipping Isoform:
ENSMUST00000064948fB8909
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGCTTTAGAACCTGTGCT
R:
ATCCATGGCTCTCACCCACAT
Band lengths:
293-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types