HsaEX6014170 @ hg38
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein axonemal heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:2951]
Coordinates
chr2:84703395-84705747:+
Coord C1 exon
chr2:84703395-84703562
Coord A exon
chr2:84704067-84704302
Coord C2 exon
chr2:84705486-84705747
Length
236 bp
Sequences
Splice sites
3' ss Seq
AGTCATGTTTCAATGGTTAGGTC
3' ss Score
3.82
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCACGAGATCGGGTGAAGAATGGTCTCACCAAGCTACTAGAAACAAACATACTAGTAGATAAAATGAAACTAGATCTTTCAGCTTTAGAGCCTGTACTTTTAGCAAAATCAGAAGATGTTGAAGCCCTGATGGAAAAATTGGCAGTGGATCAAGAAAGTGCCGATCAG
Seq A exon
GTCCGTAACACTGTGCAGGAGGATGAAGCAACAGCAAAAGTCAAAGCTGAAGAAACCCAAGCAATAGCTGATGATGCTCAAAGAGATCTTGACGAGGCACTACCTGCACTAGATGCTGCCAATAAAGCACTGGATTCCTTAGATAAGGCAGATATATCTGAAATCAGAGTTTTTACAAAGCCCCCAGATTTGGTCATGACAGTAATGGAAGCAATCTCCATTCTTTTGAATGCCAA
Seq C2 exon
GCCTGATTGGCCATCAGCAAAGCAACTTCTTGGTGACTCTAACTTTCTAAAAAGGCTTTTAGAATATGATAAGGAGAACATAAAGCCTCAGATATTGGCAAAGCTTCAAAAGTATATTAATAATCCTGATTTTGTGCCTGAAAAAGTGGAGAAAGTGTCCAAAGCATGTAAATCTATGTGCATGTGGGTAAGAGCTATGGATTTGTACTCTCGAGTGGTCAAGGTCGTCGAACCAAAAAGACAAAAGCTCCGCGCCGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423_MULTIEX1-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.278 C2=0.000
Domain overlap (PFAM):
C1:
PF139001=GVQW=PD(9.1=33.3)
A:
PF127772=MT=FE(23.3=100)
C2:
PF127772=MT=FE(26.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTTGAAGCCCTGATGGA
R:
TTTGGTTCGACGACCTTGACC
Band lengths:
292-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains