RnoEX6013937 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101012229-101015528:-
Coord C1 exon
chr4:101015361-101015528
Coord A exon
chr4:101013931-101014166
Coord C2 exon
chr4:101012229-101012490
Length
236 bp
Sequences
Splice sites
3' ss Seq
AACCTTGATTCTGTGGCTAGGTC
3' ss Score
6.72
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GCACGAGATCGTGTAACGAATGGTCTCACCAAGCTATTAGAAACAAATATATTAGTAGATAAAATGAAATTAGACCTTTCGGCTTTAGAACCTGTGCTATTCCAGAAATCACAAGACGTCGAAGCCCTGATGGAAAAACTAGTGGTGGACCAAGAAAGTGCTGATCAG
Seq A exon
GTCCGTAATGTTGTGCAAGAAGATGAAGCAATAGCAAAGGTGAAAGCTGAAGAGACTCAAGCGATTGCTGATGATGCCCAGAGAGACCTGGAAGAGGCACTCCCTGCCCTTGAGGCTGCCAATAAAGCACTGGATTCCTTAGACAAAGCAGATATCTCTGAAATCCGAGTCTTCACAAAGCCCCCTGACTTGGTCATGACTGTGATGGAAGCCATCTCCATCCTCTTAAATGCCAA
Seq C2 exon
GCCGGACTGGCCAACAGCAAAGCAACTTCTTGGTGACTCTAACTTTCTAAGAAGGCTTTTAGAATATGATAAGGAAAACATAAAACCTCAGATTCTGTCAAAGCTTCAAAGGTACATCAACAACCCTGACTTCGTGCCTGAAAAGGTGGAAAAGGTGTCCAAGGCCTGTAAATCCATGTGCATGTGGGTGAGAGCCATGGATCTGTACTCTCGGGTGGTCAAGGAAGTCGAACCAAAGAGACAGAAACTCCGTGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'52-55,'52-54,53-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(15.8=94.6)
A:
PF127772=MT=FE(23.3=100)
C2:
PF127772=MT=FE(26.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCACAAGACGTCGAAGCCC
R:
GTTCGACTTCCTTGACCACCC
Band lengths:
295-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]