DreEX0027740 @ danRer10
Exon Skipping
Gene
ENSDARG00000010042 | dnm1a
Description
dynamin 1a [Source:ZFIN;Acc:ZDB-GENE-081104-27]
Coordinates
chr5:1352814-1358628:+
Coord C1 exon
chr5:1352814-1353020
Coord A exon
chr5:1354753-1354799
Coord C2 exon
chr5:1358592-1358628
Length
47 bp
Sequences
Splice sites
3' ss Seq
GAGATTGCATTTGCTCTTAGCCG
3' ss Score
2.75
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTCTCCGGCCACCAGCCCAACCCCTCAAAGACGGGCTCCACCTCCAGGGCCTCCAGCTCGCCCAGGTTCCCGTGGTTCGGCCCCAGGGCCCCCAGCTGCAGGTGGGCCACCTGTTCCCTCCCGCCCCGGAGCCTCTCCGGACCCCTTCGGCGGACCTCCTCCTACGGTCCCATCCCGTCCTAACCGCGCCCCACCCAGTGTGCCCAG
Seq A exon
CCGCGGAGTGTGAGACTGTAATCGGTGGATTAAATGCAGTGGTGTGG
Seq C2 exon
AATTACAATCAGTGACCAATGAGGACTAACGCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010042-'28-27,'28-26,29-27
Average complexity
C3
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000147972fB2362
Main Skipping Isoform:
ENSDART00000168130fB2363
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCACCTGTTCCCTC
R:
GCGTTAGTCCTCATTGGTCACT
Band lengths:
137-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]