DreEX0028594 @ danRer10
Exon Skipping
Gene
ENSDARG00000060948 | dync1i1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
Coordinates
chr16:25406235-25409049:+
Coord C1 exon
chr16:25406235-25406325
Coord A exon
chr16:25408730-25408735
Coord C2 exon
chr16:25408990-25409049
Length
6 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGATGGGGACATCAGATA
3' ss Score
-1.41
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
TCCCAACCCCTATGTCTCCCTCTTCGCAATCAGTGAGTCCACCCAGCGAAACTGGAAGCCAGGAGTCCATAGATGGAGGGACAGTGGAAAG
Seq A exon
ATATCG
Seq C2 exon
GACGTTGCAGTGGGACACTGACCCCTCAGCTCTTCAGCTTCTTGCAGATTCTGTTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060948-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.937
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
ENSDART00000172514fB2420
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCAGTGAGTCCACCCAGC
R:
CTGAAGAGCTGAGGGGTCAGT
Band lengths:
102-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]