DreINT0060548 @ danRer10
Intron Retention
Gene
ENSDARG00000060948 | dync1i1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
Coordinates
chr16:25406235-25409049:+
Coord C1 exon
chr16:25406235-25406325
Coord A exon
chr16:25406326-25408989
Coord C2 exon
chr16:25408990-25409049
Length
2664 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TATTTTACTGACCTCTTCAGGAC
3' ss Score
8.27
Exon sequences
Seq C1 exon
TCCCAACCCCTATGTCTCCCTCTTCGCAATCAGTGAGTCCACCCAGCGAAACTGGAAGCCAGGAGTCCATAGATGGAGGGACAGTGGAAAG
Seq A exon
GTATGACATTGTAAACAAGACATTTGAAACCAATTTGAAGTATTTCATGAAGTGTGACCCTGGACCACAAAACCAAGTGTAATATTTTTTTAAATTTAGCTTTGTACATCAAAGAAAGTTGAATGAATAGGTTTTCCTTTGATGTTTGTTTTGTTATGTTAGTATAATATTTGGCCGAGAGGCAACTATTTGAAAAGCTGAAATCTGAGGGTTCAAAACTAATCTAAATACTGAGAAAATCACCTTTAAAGTTGCCCCAATGAAGTGATTAGGAATGCACATTAAAATGAGCTTTAATATAGTTACAGTCAGACATTTACTAAATTCTTCTTTAAGGAAGATGATCTTTACTTAATATTCAAATAATTTTTGGCGTCACTCATATACTATATTTAGCTATTGCTCTGGTTTTGTGGTCCAGGGCCACATATGTGAATGTGTTTTAATGAAAGGGGTTTTAAACCTCTGTTATGTATGAAGATTTCTGGAAGTCTGTCTCAGGTTTAAGGAAGGAAAAGAAGAGAGTAATAATCTACAATTTAATTTGTTGAATAATGAGTAGCACCACCATGCAGCCTGTTTTTAAAGATGTCAAAATGTATAAATAAATTTAATCTTGAATCTGTATTTCCCAAATAAAATTACAAAAGAATAAATTTATTCTCCAATGTACCTGACTTGTCGCCTATCCAAGTTTAGAAACAAAAATTAAAAACTTGACTTCTAGTTGATCATTTAGTATTAGAAGTGGCTTATACAAAAGGCAAAGACCTGAAGATTATGCTTATTTTACCAAAATAAAATATGATCATACCTTGATTTTTAATGATTTAATTAGGACAGTAAGGTCTGACTTTGCTTAGACAAAAGTCTTGTCACTTAACAGAAATAATGTACAGTATAGAATATAAACTCATGGTGCAGTGGAAAAATAATTAATATTGTTTATGACTCCCATGAGCTTGGAGGACTGCATCCACACATCTCTGCAATGACTCAAATAACTGATTAATAAAGTCATCTGGAATGGCAAAGAAAACGTTCTTGCAGGACACCCAGAGTTCATCAGGATTCTTTGAATTCATCTTGAATGCCTTCTTTGACTTACCCTAGACATGCTCAATAATGTTCAAGTCTGGTGACTGAGCTGGCCAATCCTGGAGCACCTTGACATTTTTCGCTTTCAGAACTTTGATATGGAGGCTGAAGTATGAGAAGGAGAACTATTCTGCTGAAAAATTTGCCTTGTTCTGTGGTTTGTAATATAATGGGCAGCACAAACTTCTTGATACCTCAAGCTGTTGATGTTGCTATCCACGCTGCAAATCTCTCACACGCCCCATACTGAATGTACAGTAACCCTAAACTATGATTTGTCCTTTACTAAACTTGACTGATTTCTGTAAGAATCTTGGGTCCAAACGGGTTCCAATAGGTCTTCTGCAGTATTTGTGATGATTGGGATGCAGTTCAACAGATGATCAGAAAAATCTACCTTCTGCAAAGTTATTGAAGTCAAGTTATTATTTGTTGCTCTTACCACTGGGATCAGCGACAAGACTTTTGTCAGGGAGTGTAATATCAATTAGGAGCCAGTTCATTTCATAATCATGATTTTATTTACTTCACACAATATAAGTGAGTGTATTTTGAGCTGCTTTCATATATTTTAGGAAGGAATTTCTTACAATATTCAAAAAATCACGCACAGCAGTCAAAAAAAAGTCTTAATGCTTTTGGATCTTTGGTGTTACTGTTTTTATATTTGCTTTTTTGTCTGTCACAATATTATCATCTTTATTTCTTTAAAAATGTAGAAAAAAGGATGTGAGCTTTCAGACTGATGTAGTTTATTTTATACATAATTTGCTTAAATCAAATCAAAAATCTAATAAAATTCACTATACTTTGTTTAAATTCAGGGAAATTAGATAATTTATGTGAATATTATTGGACATTATTATTTAAAGCACAGTTTAATTAGACTTGCTTCAGCAAAGTTTAGCTTCATTTTTTACTACAAATATGTTGGCTAATGTTTTTTATTATTATTATCCCAATTACATCGTCTCGTTCTATCCTTTTTACAAACAACAACAATCTATTTCTCAATGTATGTGTTTTTAACATATTGTAATGTGGTAAAGCTGAACAACTAAACTGTATTTTTATATTATATTAATTTTCTATTAGATATTAATTTTTTTTTTTTCTTCATAAGTCGTGTGTTGCGGACCTCTTGGCCTGGTAACTCTTGTAAATGAGATCTTGATCTCAATGGGGTTTTAACTTGTTAAATAAAGAAACATATATTATTATTATTATTAATATTAAATTTTAATCCCAAATCTGATGTTTGTTGTTTGTTTTTTCTTTTCCCAACATCTTTTGATGGGGACATCAGATATCGGTAAGGTTGTTGTTACTGTTGTTAGATTGAGGCATTTGTTAAAGGGTCACCCATCATCAGTGGATGTGCTTCTGTCGTAGATGTTCGAGAGTGTGGCGCCACAGCCTATATGTGATTTCATCTAAGAGACAGCGTGTTATCTCCTGTAATTATGCATGAAAAAGGGATATGTGCTGCTGGTAAAGCTGCAAGACCTAATCATGCATGTTCGTAGTCTTATCCTTCATGACTCTTTATTTTACTGACCTCTTCAG
Seq C2 exon
GACGTTGCAGTGGGACACTGACCCCTCAGCTCTTCAGCTTCTTGCAGATTCTGTTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060948:ENSDART00000086409:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.937
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]