DreEX0028592 @ danRer10
Exon Skipping
Gene
ENSDARG00000060948 | dync1i1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
Coordinates
chr16:25403367-25409049:+
Coord C1 exon
chr16:25403367-25403481
Coord A exon
chr16:25406235-25406325
Coord C2 exon
chr16:25408990-25409049
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGTTATTTTCATTATTTAGTCC
3' ss Score
7.03
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TCTGAGATGCTTCAGAGGCCTGAGAATGTGACCGAAGACTCAGATCTAGACAGGAAGAGAAGAGAAACAGAGGCTCTTCTGCAGAGTATTGGCATTTCACCTGAACCACCATTAG
Seq A exon
TCCCAACCCCTATGTCTCCCTCTTCGCAATCAGTGAGTCCACCCAGCGAAACTGGAAGCCAGGAGTCCATAGATGGAGGGACAGTGGAAAG
Seq C2 exon
GACGTTGCAGTGGGACACTGACCCCTCAGCTCTTCAGCTTCTTGCAGATTCTGTTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060948-'3-7,'3-4,4-7
Average complexity
S
Mappability confidence:
89%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.937
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATGCTTCAGAGGCCTGA
R:
CCATGAACAGAATCTGCAAGAAGC
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]