RnoEX0030333 @ rn6
Exon Skipping
Gene
ENSRNOG00000009781 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:RGD Symbol;Acc:620174]
Coordinates
chr3:57823003-57840206:+
Coord C1 exon
chr3:57823003-57823120
Coord A exon
chr3:57832689-57832779
Coord C2 exon
chr3:57840091-57840206
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGTCTATTTCACTATCTAGTCC
3' ss Score
6.84
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACTGATCAGAAGAAGGAAGCTGCAGTCTCTGTGCAGGAAGAGTCTGACCTTGAAAAGAAGAGAAGAGAAGCCGAAGCCTTGCTTCAGAGCATGGGGCTAACTACAGACTCCCCAATTG
Seq A exon
TCCCTCCTCCCATGTCTCCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTGGAAGCCAGGACTCTGGAGATGGCGCCGTGGGATCTAG
Seq C2 exon
ACGAGGACCTATTAAACTTGGAATGGCCAAAATTACTCAAGTCGACTTTCCCCCTCGAGAAATCGTCACATATACAAAGGAAACTCAGACCCCGGTTACAGCTCAACCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009781-'9-12,'9-7,15-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=1.000 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGAGAAGCCGAAGCCT
R:
TTTGGGTTGAGCTGTAACCGG
Band lengths:
172-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]