DreEX6019976 @ danRer10
Exon Skipping
Gene
ENSDARG00000103195 | dync1i2b
Description
dynein, cytoplasmic 1, intermediate chain 2b [Source:ZFIN;Acc:ZDB-GENE-090121-1]
Coordinates
chr6:3774601-3781273:+
Coord C1 exon
chr6:3774601-3774715
Coord A exon
chr6:3778066-3778156
Coord C2 exon
chr6:3781214-3781273
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGTTTCACTATTTAGTCC
3' ss Score
7.43
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTGGATGGAAGAAAGGAAGGAGCGTCTCCCCCACAGGAAGACTCTGATCTGGAGAGAAAGAGGAGGGAGGCAGAGGCTCTGTTACAGAGCATGGGGATCACAGATGCCTCCATGG
Seq A exon
TCCCCCCTCCCATGTCCCCTTCTGCCAAATCAGTGGGAACCCCAAGTGAGACGGGCAGCCAGGACTCCGGAGACGGCGGGACGGGCCCGAG
Seq C2 exon
GACTCTTCACTGGGACTCTGATCCTTCTACTCTACTGCTCCATTCAGACTCTCAGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103195-'2-7,'2-5,3-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAAAGGAAGGAGCGTC
R:
CCGAGCTGAGAGTCTGAATGG
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]