MmuEX6102089 @ mm10
Exon Skipping
Gene
ENSMUSG00000027012 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:MGI Symbol;Acc:MGI:107750]
Coordinates
chr2:71219301-71236030:+
Coord C1 exon
chr2:71219301-71219418
Coord A exon
chr2:71228600-71228690
Coord C2 exon
chr2:71235915-71236030
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTTTCATTATTTAGTCC
3' ss Score
8.06
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACTGATCAGAAGAAGGAAGCTGCTGTTTCTGTACAAGAAGAGTCTGATCTTGAAAAAAAAAGAAGAGAAGCTGAGGCATTGCTTCAAAGCATGGGACTAACTACGGACTCCCCTATTG
Seq A exon
TCCCTCCTCCTATGTCTCCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTGGAAGCCAGGATTCTGGAGATGGCGCCGTGGGATCTAG
Seq C2 exon
ACGAGGACCTATTAAACTTGGAATGGCCAAAATTACTCAAGTTGACTTTCCCCCTCGAGAAATCGTCACATACACAAAGGAAACTCAGACCCCGGTTACAGCTCAACCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027012-'11-24,'11-18,16-24
Average complexity
C1
Mappability confidence:
94%=100=89%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=1.000 C2=0.940
Domain overlap (PFAM):
C1:
NO
A:
PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGCTGAGGCATTGCTT
R:
TTTGGGTTGAGCTGTAACCGG
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types