GgaEX1021299 @ galGal4
Exon Skipping
Gene
ENSGALG00000009551 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001006519]
Coordinates
chr7:17474534-17482063:-
Coord C1 exon
chr7:17481949-17482063
Coord A exon
chr7:17479059-17479149
Coord C2 exon
chr7:17474534-17474649
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTTTCACTATTTAGTCC
3' ss Score
7.99
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACCGATCAGAAGAAGGATATTCTTCCTGTACAAGAAGAATCTGACCTTGAAAAGAAAAGAAGAGAAGCTGAAGCGTTACTTCAGAGCATGGGCTTGACACCGGAGTCTCCTGTTG
Seq A exon
TCCCTCCTCCTACCTCTCCGTCTTCCAAATCCGTGAGTACGCCAAGCGAGGCTGGGAGCCAGGACTCCGGTGATGGCGCCGTTGGATCCAG
Seq C2 exon
ACGTGGACCTGTTAAACTTGGAATGGCCAAAATCACACAAGTTGACTTTCCTCCTCGGGAAATTGTTACATATACGAAGGAGACACAAACACCTGTTATGACTCAGCCGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009551-'9-11,'9-9,10-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAAGAAGAGAAGCTGAAGC
R:
CGGCTGAGTCATAACAGGTGT
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]