BtaEX6009069 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002646 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001069351]
Coordinates
chr2:24838874-24857203:-
Coord C1 exon
chr2:24857086-24857203
Coord A exon
chr2:24846824-24846914
Coord C2 exon
chr2:24838874-24838989
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGTCTATTTCACTATTTAGTCC
3' ss Score
6.62
5' ss Seq
TAGGTACAG
5' ss Score
4.67
Exon sequences
Seq C1 exon
ACTGATCAGAAGAAGGAAGCAGTTGCTCCTGTGCAAGAAGAATCAGATCTTGAAAAAAAAAGAAGAGAAGCTGAAGCATTGCTTCAAAGCATGGGTCTAACTGCAGAATCCCCCATTG
Seq A exon
TCCCTCCTCCTATGTCTCCATCCTCCAAATCTGTGAGCACACCAAGCGAAGCTGGGAGCCAGGACTCTGGAGATGGCGCCGTGGGATCTAG
Seq C2 exon
ACGAGGACCTATTAAACTTGGAATGGCTAAAATTACACAAGTTGACTTTCCTCCTCGTGAAATTGTCACATACACAAAGGAAACTCAGACTCCAGTTATGGCTCAACCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002646-'8-12,'8-8,10-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=1.000 C2=0.942
Domain overlap (PFAM):
C1:
NO
A:
PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGAAGCTGAAGCATTGCT
R:
TGGGTTGAGCCATAACTGGAG
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]