GgaEX1021291 @ galGal3
Exon Skipping
Gene
ENSGALG00000009722 | DYNC1I1
Description
NA
Coordinates
chr2:23920614-23940121:+
Coord C1 exon
chr2:23920614-23920728
Coord A exon
chr2:23923470-23923527
Coord C2 exon
chr2:23940062-23940121
Length
58 bp
Sequences
Splice sites
3' ss Seq
GTCTCCCTCTTCGAAATCAGTGA
3' ss Score
5.07
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTGATCTACAGCAAAAGAAGGAGCCAGCTCAAGAAGATTCTGACCTAGACCGCAAGAGAAGAGAGACAGAAGCTTTGTTGCAGAGCATTGGCATATCCCCAGAACCACCTCTAG
Seq A exon
TGAGCACACCCAGTGATGCAGGCAGCCAGGACTCTGGAGATCTGGGACCCATAGGAAG
Seq C2 exon
GACCTTGCAATGGGACACAGACCCCTCAGTGCTGCAGCTCCAGTCTGACTCTGAACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009722-'1-5,'1-4,2-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAAGAAGGAGCCAGCTC
R:
CTGAGGGGTCTGTGTCCCATT
Band lengths:
134-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]