RnoEX0030321 @ rn6
Exon Skipping
Gene
ENSRNOG00000009700 | Dync1i1
Description
dynein cytoplasmic 1 intermediate chain 1 [Source:RGD Symbol;Acc:2512]
Coordinates
chr4:30851040-30868834:+
Coord C1 exon
chr4:30851040-30851154
Coord A exon
chr4:30853713-30853848
Coord C2 exon
chr4:30868775-30868834
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTGACACTGCTCTTCCCCAGTGC
3' ss Score
7.42
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCAGATATGCAGCAGAAGAAAGAGCCCGTTCCAGATGACTCCGATCTGGACCGCAAACGACGAGAGACAGAAGCTTTGCTTCAGAGCATCGGCATATCGCCGGAGCCCCCTCTAG
Seq A exon
TGCAGCCGCTGCATTTTTTAACATGGGATACCTGTTATTTTCATTATTTAGTCCCAACCCCTATGTCTCCCTCTTCGAAATCAGTGAGCACTCCCAGTGAAGCTGGAAGCCAAGACGATCTGGGGCCATTAACAAG
Seq C2 exon
GACCCTGCAGTGGGACACAGACCCCTCAGTGCTCCAGCTGCAGTCAGACTCAGAACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009700-'6-10,'6-4,7-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.565 C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCAGCAGAAGAAAGAGCCC
R:
CCAAGTTCTGAGTCTGACTGCA
Band lengths:
170-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]