BtaEX6026326 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027134 | DYNC1I1
Description
Bos taurus dynein, cytoplasmic 1, intermediate chain 1 (DYNC1I1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046516]
Coordinates
chr4:12998316-13039450:+
Coord C1 exon
chr4:12998316-12998430
Coord A exon
chr4:13001167-13001257
Coord C2 exon
chr4:13039335-13039450
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGTTATTTTCATTATTTAGTCC
3' ss Score
7.03
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTGACATGCAGCAGAAGAAAGAACCCGTTCCAGATGACTCTGACCTGGATCGCAAACGCCGAGAGACGGAGGCCCTGCTGCAAAGCATCGGGATCTCGCCAGAGCCCCCTCTAG
Seq A exon
TCCCAACCCCTATGTCTCCCTCCTCGAAATCAGTGAGCACTCCCAGTGAAGCTGGAAGCCAAGACTCAGGCGACCTGGGACCGTTGACAAG
Seq C2 exon
ACGGAGACTGCATAAGCTGGGCGTGTCGAAGATCACCCAAGTGGATTTCCTGCCCAGGGAGGTAGTGTCCTACTCCAAGGAGACCCAGACTCCTCTGGCCACACATCAGTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027134-'9-10,'9-3,10-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.650
Domain overlap (PFAM):
C1:
NO
A:
PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTCTGACCTGGATCGCA
R:
GGAGTCTGGGTCTCCTTGGAG
Band lengths:
174-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]